PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g28530
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 377aa    MW: 39998.2 Da    PI: 8.1256
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g28530genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-0792115125
                --S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                +kt+lC+ f++ GtC+y  +C+FaH
  Tp1g28530  92 FKTKLCCKFRA-GTCPYITNCNFAH 115
                69*********.************* PP

2zf-CCCH42.69.9e-14254279126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt++C+ +  tG+C++G++C+FaHg
  Tp1g28530 254 WKTRICNKWEITGYCPFGAKCHFAHG 279
                8************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-1389124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-789122IPR000571Zinc finger, CCCH-type
SMARTSM003560.004491117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3891118IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-592115IPR000571Zinc finger, CCCH-type
SMARTSM003560.47172199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-7172199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244172200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-8173199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-17249283IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-10249284IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-9253280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178253281IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-11254279IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MSHRRDSGGD VVHVIPTNNP PPENWFPNLG DSAVWATEDD YNRVWAVNPD NSSGDNGPPN  60
KKSRGSPSSS SATTTPASAA SNRTKAIGKM FFKTKLCCKF RAGTCPYITN CNFAHTVEEL  120
RRPPPNWQEI VAAHEEERSG TGTTPTTVAA VEQREEFQIP SLVSSTAESG RSFKGRHCKK  180
FYTEEGCPYG ESCTFLHDEA SRNRESVAIS LGPGGYGGGS GGGSAAGGGN SNVVVLGGGG  240
GSGSGIHIVK PSNWKTRICN KWEITGYCPF GAKCHFAHGA AELHRFGGGL VEGEGKDGVS  300
PNPDIKQTGP NLKGHSDTTT LLSPGVPHHA DAGYHSGVAL QRASSAVTQK PGIRTHQKWK  360
GPAKISRIYG DWIDDIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180130.0AK118013.1 Arabidopsis thaliana At1g32360 mRNA for putative RING-H2 zinc finger protein ATL6, complete cds, clone: RAFL19-22-M03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415209.10.0hypothetical protein EUTSA_v10007908mg
SwissprotQ9LQM30.0C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLV4KU700.0V4KU70_EUTSA; Uncharacterized protein
STRINGscaffold_103602.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.10.0C3H family protein